Draft macronucleus genome of Euplotes crassus ciliate
Identifieur interne : 002382 ( Main/Exploration ); précédent : 002381; suivant : 002383Draft macronucleus genome of Euplotes crassus ciliate
Auteurs : D. V. Vinogradov [Russie] ; O. V. Tsoi [Russie] ; A. V. Zaika [Russie] ; A. V. Lobanov [États-Unis] ; A. A. Turanov [États-Unis] ; V. N. Gladishev [États-Unis] ; M. S. Gel And [Russie]Source :
- Molecular Biology [ 0026-8933 ] ; 2012-04-01.
English descriptors
- KwdEn :
Abstract
Abstract: Basic bioinformatics analysis has been performed on the draft macronucleus genome and transcriptome of the Euplotes crassus ciliate. More than a quarter of E. crassus genes contain several exons. Among introns, a large fraction of tiny introns was revealed with the length of 20–30 nucleotides. We determined 63 cases of alternative splicing and found 14 introns with nonstandard splicing sites. About 2000 of hypothesized genes in E. crassus have no homologues with other ciliates but in the majority of them a considerable similarity is observed with bacterial genes that can be due to contamination while ciliate sample preparation. Comparison of the genomes of E. crassus and other ciliates evidences the expansion of the same gene families, which are responsible for the vitality of free-living heterotrophic organisms.
Url:
DOI: 10.1134/S0026893312020197
Affiliations:
Links toward previous steps (curation, corpus...)
- to stream Istex, to step Corpus: 000989
- to stream Istex, to step Curation: 000989
- to stream Istex, to step Checkpoint: 000399
- to stream Main, to step Merge: 002407
- to stream Main, to step Curation: 002382
Le document en format XML
<record><TEI wicri:istexFullTextTei="biblStruct"><teiHeader><fileDesc><titleStmt><title xml:lang="en">Draft macronucleus genome of Euplotes crassus ciliate</title>
<author><name sortKey="Vinogradov, D V" sort="Vinogradov, D V" uniqKey="Vinogradov D" first="D. V." last="Vinogradov">D. V. Vinogradov</name>
</author>
<author><name sortKey="Tsoi, O V" sort="Tsoi, O V" uniqKey="Tsoi O" first="O. V." last="Tsoi">O. V. Tsoi</name>
</author>
<author><name sortKey="Zaika, A V" sort="Zaika, A V" uniqKey="Zaika A" first="A. V." last="Zaika">A. V. Zaika</name>
</author>
<author><name sortKey="Lobanov, A V" sort="Lobanov, A V" uniqKey="Lobanov A" first="A. V." last="Lobanov">A. V. Lobanov</name>
</author>
<author><name sortKey="Turanov, A A" sort="Turanov, A A" uniqKey="Turanov A" first="A. A." last="Turanov">A. A. Turanov</name>
</author>
<author><name sortKey="Gladishev, V N" sort="Gladishev, V N" uniqKey="Gladishev V" first="V. N." last="Gladishev">V. N. Gladishev</name>
</author>
<author><name sortKey="Gel And, M S" sort="Gel And, M S" uniqKey="Gel And M" first="M. S." last="Gel And">M. S. Gel And</name>
</author>
</titleStmt>
<publicationStmt><idno type="wicri:source">ISTEX</idno>
<idno type="RBID">ISTEX:9D2BA8B2915E47E9FA4ABD58DF8EF490A48D3B0E</idno>
<date when="2012" year="2012">2012</date>
<idno type="doi">10.1134/S0026893312020197</idno>
<idno type="url">https://api.istex.fr/ark:/67375/VQC-JS0VVBS1-N/fulltext.pdf</idno>
<idno type="wicri:Area/Istex/Corpus">000989</idno>
<idno type="wicri:explorRef" wicri:stream="Istex" wicri:step="Corpus" wicri:corpus="ISTEX">000989</idno>
<idno type="wicri:Area/Istex/Curation">000989</idno>
<idno type="wicri:Area/Istex/Checkpoint">000399</idno>
<idno type="wicri:explorRef" wicri:stream="Istex" wicri:step="Checkpoint">000399</idno>
<idno type="wicri:doubleKey">0026-8933:2012:Vinogradov D:draft:macronucleus:genome</idno>
<idno type="wicri:Area/Main/Merge">002407</idno>
<idno type="wicri:Area/Main/Curation">002382</idno>
<idno type="wicri:Area/Main/Exploration">002382</idno>
</publicationStmt>
<sourceDesc><biblStruct><analytic><title level="a" type="main" xml:lang="en">Draft macronucleus genome of Euplotes crassus ciliate</title>
<author><name sortKey="Vinogradov, D V" sort="Vinogradov, D V" uniqKey="Vinogradov D" first="D. V." last="Vinogradov">D. V. Vinogradov</name>
<affiliation wicri:level="3"><country xml:lang="fr">Russie</country>
<wicri:regionArea>Kharkevich Institute for Information Transmission Problems, Russian Academy of Sciences, 127994, Moscow</wicri:regionArea>
<placeName><settlement type="city">Moscou</settlement>
<region>District fédéral central</region>
</placeName>
</affiliation>
<affiliation wicri:level="1"><country wicri:rule="url">Russie</country>
</affiliation>
</author>
<author><name sortKey="Tsoi, O V" sort="Tsoi, O V" uniqKey="Tsoi O" first="O. V." last="Tsoi">O. V. Tsoi</name>
<affiliation wicri:level="3"><country xml:lang="fr">Russie</country>
<wicri:regionArea>Kharkevich Institute for Information Transmission Problems, Russian Academy of Sciences, 127994, Moscow</wicri:regionArea>
<placeName><settlement type="city">Moscou</settlement>
<region>District fédéral central</region>
</placeName>
</affiliation>
<affiliation wicri:level="4"><country xml:lang="fr">Russie</country>
<wicri:regionArea>Department of Bioengineering and Bioinformatics, Moscow State University, 119991, Moscow</wicri:regionArea>
<placeName><settlement type="city">Moscou</settlement>
<region>District fédéral central</region>
</placeName>
<orgName type="university">Université d'État de Moscou</orgName>
</affiliation>
<affiliation wicri:level="1"><country wicri:rule="url">Russie</country>
</affiliation>
</author>
<author><name sortKey="Zaika, A V" sort="Zaika, A V" uniqKey="Zaika A" first="A. V." last="Zaika">A. V. Zaika</name>
<affiliation wicri:level="3"><country xml:lang="fr">Russie</country>
<wicri:regionArea>Kharkevich Institute for Information Transmission Problems, Russian Academy of Sciences, 127994, Moscow</wicri:regionArea>
<placeName><settlement type="city">Moscou</settlement>
<region>District fédéral central</region>
</placeName>
</affiliation>
<affiliation wicri:level="4"><country xml:lang="fr">Russie</country>
<wicri:regionArea>Department of Bioengineering and Bioinformatics, Moscow State University, 119991, Moscow</wicri:regionArea>
<placeName><settlement type="city">Moscou</settlement>
<region>District fédéral central</region>
</placeName>
<orgName type="university">Université d'État de Moscou</orgName>
</affiliation>
</author>
<author><name sortKey="Lobanov, A V" sort="Lobanov, A V" uniqKey="Lobanov A" first="A. V." last="Lobanov">A. V. Lobanov</name>
<affiliation wicri:level="1"><country xml:lang="fr">États-Unis</country>
<wicri:regionArea>Brigham and Women’s Hospital, Harvard Medical School, 02115, Boston, MA</wicri:regionArea>
<wicri:noRegion>MA</wicri:noRegion>
</affiliation>
</author>
<author><name sortKey="Turanov, A A" sort="Turanov, A A" uniqKey="Turanov A" first="A. A." last="Turanov">A. A. Turanov</name>
<affiliation wicri:level="1"><country xml:lang="fr">États-Unis</country>
<wicri:regionArea>Brigham and Women’s Hospital, Harvard Medical School, 02115, Boston, MA</wicri:regionArea>
<wicri:noRegion>MA</wicri:noRegion>
</affiliation>
</author>
<author><name sortKey="Gladishev, V N" sort="Gladishev, V N" uniqKey="Gladishev V" first="V. N." last="Gladishev">V. N. Gladishev</name>
<affiliation wicri:level="1"><country xml:lang="fr">États-Unis</country>
<wicri:regionArea>Brigham and Women’s Hospital, Harvard Medical School, 02115, Boston, MA</wicri:regionArea>
<wicri:noRegion>MA</wicri:noRegion>
</affiliation>
</author>
<author><name sortKey="Gel And, M S" sort="Gel And, M S" uniqKey="Gel And M" first="M. S." last="Gel And">M. S. Gel And</name>
<affiliation wicri:level="3"><country xml:lang="fr">Russie</country>
<wicri:regionArea>Kharkevich Institute for Information Transmission Problems, Russian Academy of Sciences, 127994, Moscow</wicri:regionArea>
<placeName><settlement type="city">Moscou</settlement>
<region>District fédéral central</region>
</placeName>
</affiliation>
<affiliation wicri:level="4"><country xml:lang="fr">Russie</country>
<wicri:regionArea>Department of Bioengineering and Bioinformatics, Moscow State University, 119991, Moscow</wicri:regionArea>
<placeName><settlement type="city">Moscou</settlement>
<region>District fédéral central</region>
</placeName>
<orgName type="university">Université d'État de Moscou</orgName>
</affiliation>
</author>
</analytic>
<monogr></monogr>
<series><title level="j">Molecular Biology</title>
<title level="j" type="abbrev">Mol Biol</title>
<idno type="ISSN">0026-8933</idno>
<idno type="eISSN">1608-3245</idno>
<imprint><publisher>SP MAIK Nauka/Interperiodica</publisher>
<pubPlace>Dordrecht</pubPlace>
<date type="published" when="2012-04-01">2012-04-01</date>
<biblScope unit="volume">46</biblScope>
<biblScope unit="issue">2</biblScope>
<biblScope unit="page" from="328">328</biblScope>
<biblScope unit="page" to="333">333</biblScope>
</imprint>
<idno type="ISSN">0026-8933</idno>
</series>
</biblStruct>
</sourceDesc>
<seriesStmt><idno type="ISSN">0026-8933</idno>
</seriesStmt>
</fileDesc>
<profileDesc><textClass><keywords scheme="KwdEn" xml:lang="en"><term>bioinformatics</term>
<term>ciliate</term>
<term>genome</term>
<term>genome analysis</term>
</keywords>
</textClass>
<langUsage><language ident="en">en</language>
</langUsage>
</profileDesc>
</teiHeader>
<front><div type="abstract" xml:lang="en">Abstract: Basic bioinformatics analysis has been performed on the draft macronucleus genome and transcriptome of the Euplotes crassus ciliate. More than a quarter of E. crassus genes contain several exons. Among introns, a large fraction of tiny introns was revealed with the length of 20–30 nucleotides. We determined 63 cases of alternative splicing and found 14 introns with nonstandard splicing sites. About 2000 of hypothesized genes in E. crassus have no homologues with other ciliates but in the majority of them a considerable similarity is observed with bacterial genes that can be due to contamination while ciliate sample preparation. Comparison of the genomes of E. crassus and other ciliates evidences the expansion of the same gene families, which are responsible for the vitality of free-living heterotrophic organisms.</div>
</front>
</TEI>
<affiliations><list><country><li>Russie</li>
<li>États-Unis</li>
</country>
<region><li>District fédéral central</li>
</region>
<settlement><li>Moscou</li>
</settlement>
<orgName><li>Université d'État de Moscou</li>
</orgName>
</list>
<tree><country name="Russie"><region name="District fédéral central"><name sortKey="Vinogradov, D V" sort="Vinogradov, D V" uniqKey="Vinogradov D" first="D. V." last="Vinogradov">D. V. Vinogradov</name>
</region>
<name sortKey="Gel And, M S" sort="Gel And, M S" uniqKey="Gel And M" first="M. S." last="Gel And">M. S. Gel And</name>
<name sortKey="Gel And, M S" sort="Gel And, M S" uniqKey="Gel And M" first="M. S." last="Gel And">M. S. Gel And</name>
<name sortKey="Tsoi, O V" sort="Tsoi, O V" uniqKey="Tsoi O" first="O. V." last="Tsoi">O. V. Tsoi</name>
<name sortKey="Tsoi, O V" sort="Tsoi, O V" uniqKey="Tsoi O" first="O. V." last="Tsoi">O. V. Tsoi</name>
<name sortKey="Tsoi, O V" sort="Tsoi, O V" uniqKey="Tsoi O" first="O. V." last="Tsoi">O. V. Tsoi</name>
<name sortKey="Vinogradov, D V" sort="Vinogradov, D V" uniqKey="Vinogradov D" first="D. V." last="Vinogradov">D. V. Vinogradov</name>
<name sortKey="Zaika, A V" sort="Zaika, A V" uniqKey="Zaika A" first="A. V." last="Zaika">A. V. Zaika</name>
<name sortKey="Zaika, A V" sort="Zaika, A V" uniqKey="Zaika A" first="A. V." last="Zaika">A. V. Zaika</name>
</country>
<country name="États-Unis"><noRegion><name sortKey="Lobanov, A V" sort="Lobanov, A V" uniqKey="Lobanov A" first="A. V." last="Lobanov">A. V. Lobanov</name>
</noRegion>
<name sortKey="Gladishev, V N" sort="Gladishev, V N" uniqKey="Gladishev V" first="V. N." last="Gladishev">V. N. Gladishev</name>
<name sortKey="Turanov, A A" sort="Turanov, A A" uniqKey="Turanov A" first="A. A." last="Turanov">A. A. Turanov</name>
</country>
</tree>
</affiliations>
</record>
Pour manipuler ce document sous Unix (Dilib)
EXPLOR_STEP=$WICRI_ROOT/Sante/explor/MersV1/Data/Main/Exploration
HfdSelect -h $EXPLOR_STEP/biblio.hfd -nk 002382 | SxmlIndent | more
Ou
HfdSelect -h $EXPLOR_AREA/Data/Main/Exploration/biblio.hfd -nk 002382 | SxmlIndent | more
Pour mettre un lien sur cette page dans le réseau Wicri
{{Explor lien |wiki= Sante |area= MersV1 |flux= Main |étape= Exploration |type= RBID |clé= ISTEX:9D2BA8B2915E47E9FA4ABD58DF8EF490A48D3B0E |texte= Draft macronucleus genome of Euplotes crassus ciliate }}
This area was generated with Dilib version V0.6.33. |